Re: [jats-list] Tagging volume title in a reference to a book in a titled series

Subject: Re: [jats-list] Tagging volume title in a reference to a book in a titled series
From: Bruce Rosenblum <bruce@xxxxxxxxx>
Date: Mon, 25 Jun 2012 21:46:17 -0400
Sasha,

Book Series and Book Sets are different things. The Cytokine Reference given below is a Set, not a Series (see http://www.abebooks.com/products/isbn/9780122526701). So what's missing here is a Set tag, in contrast to a Series tag in JATS.

However I think few taggers will actually do the research to determine this item is a Set not a Series, so while semantically incorrect, it might not be harmful to tag as:

   <mixed-citation publication-type="book" publication-format="print">
   <name><surname>Murphy</surname><given-names>PM</given-names></name>.
   <chapter-title>Chemokine receptors: overview</chapter-title>. In:
   <name><surname>Oppenheim</surname><given-names>JJ</given-names></name>,
   <name><surname>Feldmann</surname><given-names>M</given-names></name>,
   <name><surname>Durum</surname><given-names>SK</given-names></name>,
   <name><surname>Hirano</surname><given-names>T</given-names></name>,
   <name><surname>Vilcek</surname><given-names>J</given-names></name>,

<name><surname>Nicola</surname><given-names>NA</given-names></name>, editors.
<series>Cytokine reference: a compendium of cytokines and other mediators of
host defense</series>. <volume>Vol. 2</volume>, <source>Receptors</source>.
<publisher-loc>London</publisher-loc>:
<publisher-name>Academic Press</publisher-name>;
<year>c2001</year>. p.
<fpage>1971</fpage>-<lpage>1980</lpage>.
</mixed-citation>


Note that the text before the volume number is the name of the Set (and in the Genome Analysis example below, the text before the volume number is the name of the series), and in both cases the text after the volume number is the volume title within the set/series, which should be tagged with source.

This tagging neatly maps to the CrossRef schema.

Bruce

At 10:18 AM 6/21/2012, Schwarzman, Alexander wrote:
Are there best practices for tagging volume title in a reference to a book in a titled series (multivolume set) using NLM DTD 3.0?

PMC (http://www.ncbi.nlm.nih.gov/pmc/pmcdoc/tagging-guidelines/citations/v3/books2.html#d3e31113,
16. Contributed chapter in one volume of a multivolume book), inexplicably, suggests using <edition>:


Murphy PM. Chemokine receptors: overview. In: Oppenheim JJ, Feldmann M, Durum SK, Hirano T, Vilcek J, Nicola NA, editors. Cytokine reference: a compendium of cytokines and other mediators of host defense. Vol. 2, Receptors. London:
Academic Press; c2001. p. 1971-1980.


   <mixed-citation publication-type="book" publication-format="print">
   <name><surname>Murphy</surname><given-names>PM</given-names></name>.
   <chapter-title>Chemokine receptors: overview</chapter-title>. In:
   <name><surname>Oppenheim</surname><given-names>JJ</given-names></name>,
   <name><surname>Feldmann</surname><given-names>M</given-names></name>,
   <name><surname>Durum</surname><given-names>SK</given-names></name>,
   <name><surname>Hirano</surname><given-names>T</given-names></name>,
   <name><surname>Vilcek</surname><given-names>J</given-names></name>,

<name><surname>Nicola</surname><given-names>NA</given-names></name>, editors.
<source>Cytokine reference: a compendium of cytokines and other mediators of
host defense</source>. <edition>Vol. 2, Receptors</edition>.
<publisher-loc>London</publisher-loc>:
<publisher-name>Academic Press</publisher-name>;
<year>c2001</year>. p.
<fpage>1971</fpage>-<lpage>1980</lpage>.
</mixed-citation>


The Tag library does not seem to have an example of a tagged reference to a titled, as opposed to a numbered, series

(
the numbered series example is strange
too because it folds volume number inside the <series> element:

   <series>Studies in health and human services; vol. 37</series>
)

But, back to the volume title in a titled series, CrossRef (http://www.crossref.org/schema/info/CrossRef%20Schema%20Documentation%204.1.0.pdf, p.38) suggests the following when depositing such a citation:

9. E. M. Rinchik, L. B. Russell, 1990 Germ-line deletion mutations in the mouse: tools for intensive functional and physical mapping of regions of the mammalian genome, pp. 121-158 in Genome Analysis, Volume 1: Genetic and Physical Mapping edited by K. Davies and S. Tilgh-man.
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.


   <citation key="b9">
   <series_title>Genome Analysis</series_title>
   <volume_title>Genetic and Physical Mapping</volume_title>
   <author>Rinchik</author>
   <volume>1</volume>
   <first_page>121</first_page>
   <cYear>1990</cYear>
   </citation>

which implies that volume number and the volume title must be tagged separately.

One could use <volume> to tag the whole thing, i.e., <volume>Volume 1: Genetic and Physical Mapping</volume> but that is not a good option because in CrossRef deposit schema <volume>'s length is limited to 32 characters. One could then chop off the content exceeding 32 characters during the transformation before depositing it to CrossRef but I doubt this is advisable.

Any suggestions?

Thanks,

--Sasha

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