[jats-list] Re: <contrib> insights welcome

["Sproat, Eliza X esproat@xxxxxxx" <jats-list-service@xxxxxxxxxxxxxxxxxxxxxx>]

Thank you!

From: Beck, Jeff (NIH/NLM/NCBI) [E] beck@xxxxxxxxxxxxxxxx
<jats-list-service@xxxxxxxxxxxxxxxxxxxxxx>
Sent: Wednesday, February 22, 2023 13:09
To: jats-list@xxxxxxxxxxxxxxxxxxxxxx
Subject: [EXT] [jats-list] Re: <contrib> insights welcome

[Actual Sender is
jats-list-return-1752-esproat=cas.org@xxxxxxxxxxxxxxxxxxxxxx<mailto:jats-list
-return-1752-esproat=cas.org@xxxxxxxxxxxxxxxxxxxxxx>]
Hi Eliza

It looks like you have parsed names (<surname> and <given-names>) and are not
providing character data within the <string-name>, so probably the easiest way
to get rid of this error is to use <name> rather than <string-name> in
<contrib>.

Jeff


________________________________
From: Sproat, Eliza X esproat@xxxxxxx<mailto:esproat@xxxxxxx>
<jats-list-service@xxxxxxxxxxxxxxxxxxxxxx<mailto:jats-list-service@xxxxxxxxxx
errytech.com>>
Sent: Wednesday, February 22, 2023 12:34 PM
To: jats-list@xxxxxxxxxxxxxxxxxxxxxx<mailto:jats-list@xxxxxxxxxxxxxxxxxxxxxx>
<jats-list@xxxxxxxxxxxxxxxxxxxxxx<mailto:jats-list@xxxxxxxxxxxxxxxxxxxxxx>>
Subject: [EXTERNAL] [jats-list] <contrib> insights welcome

Greetings,



First time posting to list. New to role--incumbent left at head of pandemic.
Comfortable with the why of XML; look forward to growing skills in the how.
Would appreciate your ideas about the <contrib> tag.



Fixing errors returned by the PMC Style Checker to develop a template that
will be used downstream (for the xslt). This strategy has so far yielded
decent results. For example, an external-supplied xml file (jats 1.3)
initially returned a valid DTD (joy) along with 20 errors and 18 warnings.
After working through errors, new PMC result now indicates 11 errors and no
warnings. Feels like progress. Am a bit *familiar with the <contrib> tag, but
not much as I would like. Seek your input if you have any.



Sample of PMC-returned errors:

133: <string-name name-style="western">

> ^

> error: contrib content check: <contrib> must have one of the following:
[collab, collab-alternatives, name, name-alternatives, anonymous]. (Tagging
Guidelines) see
https://www.ncbi.nlm.nih.gov/pmc/pmcdoc/tagging-guidelines/article/tags.html#
el-contrib

> Go to the next error

show ....

143: <contrib-id authenticated="true"
contrib-id-type="orcid">https://gcc02.safelinks.protection.outlook.com/?url=h
ttps%3A%2F%2Forcid.org%2F0000-0002-9010-2865&data=05%7C01%7Cbeck%40ncbi.nlm.n
ih.gov%7C99f1ef47b5ac43d67db208db14fb1dda%7C14b77578977342d58507251ca2dc2b06%
7C0%7C0%7C638126841010133995%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQ
IjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=%2FJhUUsWivh
X0Wpdkq4k5Id8hQDSv%2FSQwOZTa1aUvLUA%3D&reserved=0</contrib-id<https://gcc02.s
afelinks.protection.outlook.com/?url=https%3A%2F%2Forcid.org%2F0000-0002-9010
-2865&data=05%7C01%7Cbeck%40ncbi.nlm.nih.gov%7C99f1ef47b5ac43d67db208db14fb1d
da%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C638126841010133995%7CUnknown%
7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0
%3D%7C3000%7C%7C%7C&sdata=%2FJhUUsWivhX0Wpdkq4k5Id8hQDSv%2FSQwOZTa1aUvLUA%3D&
reserved=0%3c/contrib-id>>

> ^

> error: contrib content check: <contrib> must have one of the following:
[collab, collab-alternatives, name, name-alternatives, anonymous]. (Tagging
Guidelines) see
https://www.ncbi.nlm.nih.gov/pmc/pmcdoc/tagging-guidelines/article/tags.html#
el-contrib



====Sample original XML====

<string-name name-style="western">

                                                <given-names>Eileen</given-na
mes>

                                                <surname>Rogers</surname>

                                        </string-name>

                                        <x xml:space="preserve">, </x>

                                        <xref ref-type="aff" rid="AFF10">

                                                <sup>10</sup>

                                        </xref>

                                </contrib>

                                <contrib contrib-type="author">

                                        <string-name name-style="western">

                                                <given-names>Michaela</given-
names>

                                                <surname>Praus</surname>

                                        </string-name>

                                        <x xml:space="preserve"> &amp; </x>

                                        <xref ref-type="aff" rid="AFF11">

                                                <sup>11</sup>

                                        </xref>

                                </contrib>

                                <contrib contrib-type="author" corresp="yes">

                                        <contrib-id contrib-id-type="orcid"
authenticated="false">https://gcc02.safelinks.protection.outlook.com/?url=htt
ps%3A%2F%2Forcid.org%2F0000-0002-9010-2865&data=05%7C01%7Cbeck%40ncbi.nlm.nih
.gov%7C99f1ef47b5ac43d67db208db14fb1dda%7C14b77578977342d58507251ca2dc2b06%7C
0%7C0%7C638126841010133995%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIj
oiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=%2FJhUUsWivhX0
Wpdkq4k5Id8hQDSv%2FSQwOZTa1aUvLUA%3D&reserved=0</contrib-id<https://gcc02.saf
elinks.protection.outlook.com/?url=https%3A%2F%2Forcid.org%2F0000-0002-9010-2
865&data=05%7C01%7Cbeck%40ncbi.nlm.nih.gov%7C99f1ef47b5ac43d67db208db14fb1dda
%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C638126841010133995%7CUnknown%7C
TWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3
D%7C3000%7C%7C%7C&sdata=%2FJhUUsWivhX0Wpdkq4k5Id8hQDSv%2FSQwOZTa1aUvLUA%3D&re
served=0%3c/contrib-id>>

                                        <string-name name-style="western">

                                                <given-names>Mikhail
A</given-names>

                                                <surname>Rojavin</surname>

                                        </string-name>

                                        <xref ref-type="corresp"
rid="COR1">*</xref>

                                        <xref ref-type="aff" rid="AFF9">

                                                <sup>9</sup>

                                        </xref>

                                </contrib>



I am looking for ways to resolve the <contrib> errors without mangling the
data. Any tags I might add would seem to muddy the intent of the original. I
already played around with a couple of things (order of authenticated="false"
ahead of contrib-id-type; and seeing what happened when "false" replaced with
"true") but neither improved the situation.



Thank you,

E. Sproat



* for example, colleague helped me see that <contrib-group> requires <contrib>
tag nested between when <collab> tag present.



** PS: Would appreciate too any of your favorite xml or jats book
recommendations (or sites other than the obvious
https://www.ncbi.nlm.nih.gov/pmc/tools/stylechecker/ ,
https://jats.nlm.nih.gov/publishing/1.3/,
https://www.ncbi.nlm.nih.gov/pmc/pmcdoc/tagging-guidelines/article/tags.html#
el-contrib and W3C).















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