Subject: [jats-list] I'm looking for examples of tagging molecular strucutres in the nlm 3.0 archiving tag set From: Ian Mulvany <i.mulvany@xxxxxxxxxxxxxxxxx> Date: Thu, 8 Nov 2012 15:17:02 +0000 |
Specifically would it be possible to use the <alternative> tag to contain both a pointer to a local server side hosted .pdb file, and a reference to a named pdb entity? I'm thinking of something like the following: <chem-struct-wrap> <caption> <p>This is the caption for the chemical structure. This tagging includes reference to an image to be used in processing the XML. It also includes reference to a locally hosted in-line-supplimentary data file with the pdb data held locally. It also contains a reference to an external link for a pdb resource. It also contains a marked up pdb named entity.</p> </caption> <alternatives> <graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="pq0209587032" specific-use="print"></graphic> <chem-struct>1crn</chem-struct> <inline-supplementary-material xmlns:xlink="http://www.w3.org/1999/xlink" xlink:title="local_pdb_file" xlink:href="1crn.pdb">1crn.pdb</inline-supplementary-material> http://www.rcsb.org/pdb/explore/explore.do?structureId=1CRN <ext-link ext-link-type="pdb" xlink:href="http://dx.doi.org/elife/10.7554/eLife.00065.008">1CRN</ext-link> </alternatives> </chem-struct-wrap> Has anyone any experience? What am I doing wrong here (I always start from the assumption that I am doing something wrong) - Ian
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