[jats-list] Re: JATS 1.3 and Oxygen 17.1

["Lizzi, Vincent vincent.lizzi@xxxxxxxxxxxxxxxxxxxx" <jats-list-service@xxxxxxxxxxxxxxxxxxxxxx>]

Hi Diane,

Any version of oXygen can be configured to use a different version of JATS
than the versions that come packaged in the JATS Kit framework. Michael
described the basic approach.

In addition, some errors can be resolved or prevented by making sure that the
DOCTYPE at the beginning of each of your JATS XML documents contains a full
remote URL to the JATS DTD that you are using instead of just a file name. If
a full remote URL to the DTD is present in the DOCTYPE then oXygen (and other
software) can access the DTD via the URL, so it doesn't matter as much if the
file is opened in a program that isn't configured with a specific version of
the JATS DTD.  Here are DOCTYPE declarations with full remote URLs for several
versions of the JATS 1.3 DTD (I'm not sure which one of these you need).

JATS 1.3 Archiving with OASIS Tables and MathML 3:

<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and
Interchange DTD with OASIS Tables with MathML3 v1.3 20210610//EN"
"https://jats.nlm.nih.gov/archiving/1.3/JATS-archive-oasis-article1-3-mathml3
.dtd">

JATS 1.3 Archiving with MathML 3:

<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and
Interchange DTD with MathML3 v1.3 20210610//EN"
"https://jats.nlm.nih.gov/archiving/1.3/JATS-archivearticle1-3.dtd";>

JATS 1.3 Publishing with OASIS Tables and MathML 3:

<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD
with OASIS Tables with MathML3 v1.3 20210610//EN"
"https://jats.nlm.nih.gov/publishing/1.3/JATS-journalpublishing-oasis-article
1-3-mathml3.dtd">

JATS 1.3 Publishing with MathML 3:

<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD
with MathML3 v1.3 20210610//EN"
"https://jats.nlm.nih.gov/publishing/1.3/JATS-journalpublishing1-3.dtd";>

Adding the full remote URL to the DOCTYPE can make a shift from not working to
working. It is still a really good idea to have oXygen (or any software you
are using frequently to work with JATS XML documents) configured for the
specific version of the JATS DTD that you are using. For example, using an XML
Catalog and a local copy of the DTD similar to what the JATSKit framework
provides. Validating and parsing XML documents can be slow when the DTD is
retrieved via a remote URL so having this configuration will allow the
software to work much faster for your day to day activity.

Kind regards,
Vincent

_____________________________________________
Vincent M. Lizzi
Head of Information Standards | Taylor & Francis Group
vincent.lizzi@xxxxxxxxxxxxxxxxxxxx<mailto:vincent.lizzi@xxxxxxxxxxxxxxxxxxxx>



Information Classification: General
From: Michael Boudreau mboudreau@xxxxxxxxxxxx
<jats-list-service@xxxxxxxxxxxxxxxxxxxxxx>
Sent: Friday, July 1, 2022 11:07 AM
To: jats-list@xxxxxxxxxxxxxxxxxxxxxx
Subject: [jats-list] Re: JATS 1.3 and Oxygen 17.1

Hi Diane,

Oxygen isn't the only XML editor, but it's one of the best (at least, I'm
accustomed to it and would hate to give it up).

I would recommend making a copy of the JATSKit framework that comes with
Oxygen and modifying the copy for your purposes: create an association rule to
use the new framework for your JATS 1.3 documents, download the 1.3 DTD and
update the framework to use it.

--
Michael R. Boudreau
Electronic Publishing Technology Manager
The University of Chicago Press
1427 E. 60th Street
Chicago, IL 60637
www.journals.uchicago.edu<http://www.journals.uchicago.edu>


From: Diane Collins dcollins@xxxxxxxx<mailto:dcollins@xxxxxxxx>
<jats-list-service@xxxxxxxxxxxxxxxxxxxxxx<mailto:jats-list-service@xxxxxxxxxx
errytech.com>>
Date: Thursday, June 30, 2022 at 4:33 PM
To: jats-list@xxxxxxxxxxxxxxxxxxxxxx<mailto:jats-list@xxxxxxxxxxxxxxxxxxxxxx>
<jats-list@xxxxxxxxxxxxxxxxxxxxxx<mailto:jats-list@xxxxxxxxxxxxxxxxxxxxxx>>
Subject: [jats-list] JATS 1.3 and Oxygen 17.1
This is a long shot, but here is my situation.

We have recently upgraded to jats 1.3 and were using Oxygen 17.1 to edit our
xmls. We are now experiencing spacing problems and validation errors. I could
not find any new jatskit utilizing jats 1.3.
Is Oxygen the only or best xml editing software? Is there any way to import
the dtd of 1.3 to Oxygen?
We did try the 24.1 version of Oxygen and that does not have the 1.3 framework
of JATS.

Diane Collins
Assistant Director: Journal Operations

Radiological Society of North America
820 Jorie Blvd, Oak Brook, IL 60523
TEL 1-630-481-1021
dcollins@xxxxxxxx<mailto:dcollins@xxxxxxxx>


Radiological Society of North America
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